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Rebecka Jörnsten
Professor
Applied Mathematics and StatisticsAbout Rebecka Jörnsten
Rebecka Jörnsten is an Associate Professor in mathematical statistics. Her research interests include model selection, clustering and data integration in systems biology. She is active in several collaborative projects. Together with the Nelander lab, SciLife, Uppsala University, she develops large-scale network models for human cancer. She is also working with scientists at Sahlgrenska academy, Centre for brain repair, investigating how music can be used for rehabilitation and therapy.
For more information, please visit http://www.math.chalmers.se/~jornsten
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SE(3)-bi-equivariant Transformers for Point Cloud
Assembly
Ziming Wang, Rebecka Jörnsten
Advances in Neural Information Processing Systems - 2024 -
Generation and analysis of context-specific genome-scale metabolic models derived from-cell
data
J. Gustafsson, M. Anton, F. Roshanzamir, Rebecka Jörnsten, E. J. Kerkhoven, J. L. Robinson, J. Nielsen
Proceedings of the National Academy of Sciences of the United States of America - 2023 -
Elastic Gradient Descent, an Iterative Optimization Method Approximating the Solution Paths of the Elastic
Net
Oskar Allerbo, Johan Jonasson, Rebecka Jörnsten
JOURNAL OF MACHINE LEARNING RESEARCH - 2023 -
Evidence of seasonal variation of childhood acute lymphoblastic leukemia in
Sweden
Gleb Bychkov, Benedicte Bang, Nikas Engsner, Mats Heyman, Anna Skarin Nordenvall, Giorgio Tettamanti, Emeli Ponten, Jan Albert, Rebecka Jörnsten, Claes Strannegård, Ann Nordgren
2023 -
Flexible, non-parametric modeling using regularized neural
networks
Oskar Allerbo, Rebecka Jörnsten
Computational Statistics - 2022 -
Dose-response relationships of intestinal organs and excessive mucus discharge after gynaecological
radiotherapy.
Eleftheria Alevronta, Viktor Skokic, Gail Dunberger, Cecilia Bull, Karin Bergmark, Rebecka Jörnsten, Gunnar Steineck
PloS one - 2021 -
Non-linear, sparse dimensionality reduction via path lasso penalized
autoencoders
Oskar Allerbo, Rebecka Jörnsten
Journal of Machine Learning Research - 2021 -
Sources of variation in cell-type RNA-Seq
profiles
Johan Gustafsson, Felix Held, J. L. Robinson, Elias Björnson, Rebecka Jörnsten, J. Nielsen
PLoS ONE - 2020 -
DSAVE: Detection of misclassified cells in single-cell RNA-Seq
data
Johan Gustafsson, Jonathan Robinson, Juan Salvador Inda Díaz, Elias Björnson, Rebecka Jörnsten, Jens Nielsen
PloS one - 2020 -
Molecular natural history of breast cancer: Leveraging transcriptomics to predict breast cancer progression and
aggressiveness
D. J. Cook, Jonatan Kallus, Rebecka Jörnsten, J. Nielsen
Cancer Medicine - 2020 -
Digital twins to personalize
medicine.
Bergthor Björnsson, Carl Borrebaeck, Nils Elander, Thomas Gasslander, Danuta R Gawel, Mika Gustafsson, Rebecka Jörnsten, Eun Jung Lee, Xinxiu Li, Sandra Lilja, David Martínez-Enguita, Andreas Matussek, Per Sandström, Samuel Schäfer, Margaretha Stenmarker, X F Sun, Oleg Sysoev, Huan Zhang, Mikael Benson
Genome medicine - 2019 -
Late radiation-induced bowel syndromes, tobacco smoking, age at treatment and time since treatment - gynecological cancer
survivors
Gunnar Steineck, Fei Sjöberg, Viktor Skokic, Cecilia Bull, Ulrica Wilderäng, Eleftheria Alevronta, G. Dunberger, Karin Bergmark, Rebecka Jörnsten
Acta Oncologica - 2017 -
LASSIM - A network inference toolbox for genome-wide mechanistic
modeling
Rasmus Magnusson, Guido Pio Mariotti, Mattias Köpsén, William Lövfors, Danuta R. Gawel, Rebecka Jörnsten, Jörg Linde, Torbjörn Nordling, Elin Nyman, Sylvie Schulze, Colm E. Nestor, Huan Zhang, Gunnar Cedersund, Mikael Benson, Andreas Tjärnberg, Mika Gustafsson
PLoS Computational Biology - 2017 -
Identifying radiation-induced survivorship syndromes affecting bowel health in a cohort of gynecological cancer
survivors
Gunnar Steineck, Viktor Skokic, Fei Sjöberg, Cecilia Bull, Eleftheria Alevronta, Gail Dunberger, Karin Bergmark, Ulrica Wilderäng, Jung Hun Oh, Joseph O. Deasy, Rebecka Jörnsten
PLoS ONE - 2017 -
A Factor Analysis Approach for Clustering Patient Reported
Outcomes
J. H. Oh, M. Thor, Caroline Olsson, Viktor Skokic, Rebecka Jörnsten, David Alsadius, N. Pettersson, Gunnar Steineck, J. O. Deasy, Multivariate Behavioral Research V. P. Ttell Rb
Methods of Information in Medicine - 2016 -
Integrative Modeling Reveals Annexin A2-mediated Epigenetic Control of Mesenchymal
Glioblastoma
Teresia Kling, R. Ferrarese, D. O. Ailin, P. Johansson, D. H. Heiland, F. P. Dai, I. Vasilikos, A. Weyerbrock, Rebecka Jörnsten, M. S. Carro, S. Nelander
Ebiomedicine - 2016 -
Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web
content
Teresia Kling, P. Johansson, José Sánchez, V. D. Marinescu, Rebecka Jörnsten, S. Nelander
Nucleic Acids Research - 2015 -
Efficient exploration of multi-cancer networks by generalized covariance selection and interactive web
content
T. Kling, P. Johansson, José Sánchez, V. D. Marinescu, Rebecka Jörnsten, S. Nelander
Cancer Research - 2015 -
DNA Methylation Changes Separate Allergic Patients from Healthy Controls and May Reflect Altered CD4⁺ T-Cell Population
Structure
C.E. Nestor, Fredrik Barrenäs, Hui Wang, A. Lentini, H. Zhang, Sören Bruhn, Rebecka Jörnsten, M.A. Langston, G. Rogers, M. Gustafsson, M. Benson
PLoS Genetics - 2014 -
Erratum: Music structure determines heart rate variability of
singers.
Björn Vickhoff, Helge Malmgren, Rickard Aström, Gunnar F Nyberg, Seth-Reino Ekström, Mathias Engwall, Johan Snygg, Michael Nilsson, Rebecka Jörnsten
Frontiers in psychology - 2013 -
Music structure determines heart rate variability of
singers
Björn Vickhoff, Helge Malmgren, Rickard Åström, Gunnar Nyberg, Seth-Reino Ekström, Mathias Engwall, Johan Snygg, Michael Nilsson, Rebecka Jörnsten
Frontiers in Psychology - 2013 -
The cancer genome atlas pan-cancer analysis
project
J. N. Weinstein, E. A. Collisson, G. B. Mills, K. R. M. Shaw, B. A. Ozenberger, K. Ellrott, C. Sander, J. M. Stuart, K. Chang, C. J. Creighton, C. Davis, L. Donehower, J. Drummond, D. Wheeler, A. Ally, M. Balasundaram, I. Birol, Y. S. N. Butterfield, A. Chu, E. Chuah, H. J. E. Chun, N. Dhalla, R. Guin, M. Hirst, C. Hirst, R. A. Holt, S. J. M. Jones, D. Lee, H. I. Li, M. A. Marra, M. Mayo, R. A. Moore, A. J. Mungall, A. G. Robertson, J. E. Schein, P. Sipahimalani, A. Tam, N. Thiessen, R. J. Varhol, R. Beroukhim, A. S. Bhatt, A. N. Brooks, A. D. Cherniack, S. S. Freeman, S. B. Gabriel, E. Helman, J. Jung, M. Meyerson, A. I. Ojesina, C. S. Pedamallu, G. Saksena, S. E. Schumacher, B. Tabak, T. Zack, E. S. Lander, C. A. Bristow, A. Hadjipanayis, P. Haseley, R. Kucherlapati, S. Lee, E. Lee, L. J. Luquette, H. S. Mahadeshwar, A. Pantazi, M. Parfenov, P. J. Park, A. Protopopov, X. Ren, N. Santoso, J. Seidman, S. Seth, X. Song, J. Tang, R. Xi, A. W. Xu, L Yang, D. Zeng, J. T. Auman, S. Balu, E. Buda, C. Fan, K. A. Hoadley, C. D. Jones, S. Meng, P. A. Mieczkowski, J. S. Parker, C. M. Perou, J. Roach, Y. Shi, G. O. Silva, D. Tan, U. Veluvolu, S. Waring, M. D. Wilkerson, J. Wu, W. Zhao, T. Bodenheimer, D. N. Hayes, A. P. Hoyle, S. R. Jeffreys, L. E. Mose, J. V. Simons, M. G. Soloway, S. B. Baylin, B. P. Berman, M. S. Bootwalla, L. Danilova, J. G. Herman, T. Hinoue, P. W. Laird, S. K. Rhie, H. Shen, T. Triche, D. J. Weisenberger, S. L. Carter, K. Cibulskis, L. Chin, J Zhang, C. Sougnez, M. Wang, G. Getz, H. Dinh, H. V. Doddapaneni, R. Gibbs, P. Gunaratne, Y. Han, D. Kalra, C. Kovar, L. Lewis, M. Morgan, D. Morton, D. Muzny, J. Reid, L. Xi, J. Cho, D. Dicara, S. Frazer, N. Gehlenborg, D. I. Heiman, J. Kim, M. S. Lawrence, P. Lin, Y. Liu, M. S. Noble, P. Stojanov, D. Voet, H. Zhang, L. Zou, C. Stewart, B. Bernard, R. Bressler, A. Eakin, L. Iype, T. Knijnenburg, R. Kramer, R. Kreisberg, K. Leinonen, J. Lin, Y Liu, M. Miller, S. M. Reynolds, H. Rovira, I. Shmulevich, V. Thorsson, D. Yang, W. Zhang, S. Amin, C. J. Wu, C. C. Wu, R. Akbani, K. Aldape, K. A. Baggerly, B. Broom, T. D. Casasent, J. Cleland, D. Dodda, M. Edgerton, L. Han, S. M. Herbrich, Z. Ju, H. Kim, S. Lerner, J. Li, H. Liang, W. Liu, P. L. Lorenzi, Y. Lu, J. Melott, L. Nguyen, X. Su, R. Verhaak, W. Wang, A. Wong, Y. Yang, J. Yao, R. Yao, K. Yoshihara, Y. Yuan, A. K. Yung, N. Zhang, S. Zheng, M. Ryan, D. W. Kane, B. A. Aksoy, G. Ciriello, G. Dresdner, J. Gao, B. Gross, A. Jacobsen, A. Kahles, M. Ladanyi, W. Lee, K. V. Lehmann, M. L. Miller, R. Ramirez, G. Rätsch, B. Reva, N. Schultz, Y. Senbabaoglu, R. Shen, R. Sinha, S. O. Sumer, Y. Sun, B. S. Taylor, N. Weinhold, S. Fei, P. Spellman, C. Benz, D. Carlin, M. Cline, B. Craft, M. Goldman, D. Haussler, S. Ma, S. Ng, E. Paull, A. Radenbaugh, S. Salama, A. Sokolov, T. Swatloski, V. Uzunangelov, P. Waltman, C. Yau, J. Zhu, S. R. Hamilton, S. Abbott, R. Abbott, N. D. Dees, K. Delehaunty, L. Ding, D. J. Dooling, J. M. Eldred, C. C. Fronick, R. Fulton, L. L. Fulton, J. Kalicki-Veizer, K. L. Kanchi, C. Kandoth, D. C. Koboldt, D. E. Larson, T. J. Ley, L. Lin, C. Lu, V. J. Magrini, E. R. Mardis, M. D. McLellan, J. F. McMichael, C. A. Miller, M. O'Laughlin, C. Pohl, H. Schmidt, S. M. Smith, J. Walker, J. W. Wallis, M. C. Wendl, R. K. Wilson, T. Wylie, Q. Zhang, R. Burton, M. A. Jensen, A. Kahn, T. Pihl, D. Pot, Y. Wan, D. A. Levine, A. D. Black, J. Bowen, J. Frick, J. M. Gastier-Foster, H. A. Harper, C. Helsel, K. M. Leraas, T. M. Lichtenberg, C. McAllister, N. C. Ramirez, S. Sharpe, L. Wise, E. Zmuda, S. J. Chanock, T. Davidsen, J. A. Demchok, G. Eley, I. Felau, M. Sheth, H. Sofia, L. Staudt, R. Tarnuzzer, Z. Wang, L. Yang, J. Zhang, L. Omberg, A. Margolin, B. J. Raphael, F. Vandin, H. T. Wu, M. D. M. Leiserson, S. C. Benz, C. J. Vaske, H. Noushmehr, D. Wolf, L. V. Veer, D. Anastassiou, T. H. O. Yang, N. Lopez-Bigas, A. Gonzalez-Perez, D. Tamborero, Z. Xia, W. Li, D. Y. Cho, T. Przytycka, M. Hamilton, S. McGuire, Sven Nelander, P. Johansson, Rebecka Jörnsten, Teresia Kling, José Sánchez
Nature Genetics - 2013 -
Searching for Synergies: Matrix Algebraic Approaches for Efficient Pair
Screening
Philip Gerlee, Linnéa Schmidt, Naser Monsefi, Teresia Kling, Rebecka Jörnsten, Sven Nelander
PLoS ONE - 2013 -
Chronological Changes in MicroRNA Expression in the Developing Human
Brain
M. Moreau, S. Bruse, Rebecka Jörnsten, Y. Liu, L. Brzustowicz
PLoS ONE - 2013 -
System-scale network modeling of cancer using
EPoC
Tobias Abenius, Rebecka Jörnsten, Teresia Kling, Linnéa Schmidt, José Sánchez, Sven Nelander
Advances in Experimental Medicine and Biology - 2012 -
Transcriptional and metabolic data integration and modeling for identification of active
pathways
A. Jauhiainen, Olle Nerman, G. Michailidis, Rebecka Jörnsten
Biostatistics - 2012 -
Highly interconnected genes in disease-specific networks are enriched for disease-associated
polymorphisms
Fredrik Barrenäs, Sreenivas Chavali, Alexessander Couto Alves, Lachlan Coin, Marjo-Riitta Jarvelin, Rebecka Jörnsten, Michael A Langston, Adaikalavan Ramasamy, Gary Rogers, Hui Wang, Mikael Benson
Genome Biology - 2012 -
Network modeling of the transcriptional effects of copy number aberrations in
glioblastoma
Rebecka Jörnsten, Tobias Abenius, Teresia Kling, Linnéa Schmidt, Erik Johansson, Torbjörn E M Nordling, Bodil Nordlander, Chris Sander, Peter Gennemark, Keiko Funa, Björn Nilsson, Linda Lindahl, Sven Nelander
Molecular Systems Biology - 2011 -
Color preference, seasonality, spatial distribution and species composition of thrips (Thysanoptera: Thripidae) in northern highbush
blueberries
C.R. Rodriguez-Saona, S. Polayarapu, J.D. Barry, D. Polk, Rebecka Jörnsten, P.V. Oudemans, O.E. Liburd
Crop Protection - 2010